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Showing posts with the label Biopython
Biopython Alignio Valueerror Says Strings Must Be Same Length?

Biopython Alignio Valueerror Says Strings Must Be Same Length?

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Input fasta-format text file: http://www.jcvi.org/cgi-bin/tigrfams/DownloadFile.cgi?file=/opt/www/w… Read more Biopython Alignio Valueerror Says Strings Must Be Same Length?
Biopython Pdb: Calculate Distance Between An Atom And A Point

Biopython Pdb: Calculate Distance Between An Atom And A Point

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Using a typical pdb file, I am able to calculate the distance between two atoms in a structure usin… Read more Biopython Pdb: Calculate Distance Between An Atom And A Point
Biopython Error - The System Cannot Find The File Specified

Biopython Error - The System Cannot Find The File Specified

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I have encountered an error which I am not able to resolve. I am trying to perform the easiest set … Read more Biopython Error - The System Cannot Find The File Specified
Reverse Complement Of Dna Strand Using Python

Reverse Complement Of Dna Strand Using Python

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I have a DNA sequence and would like to get reverse complement of it using Python. It is in one of … Read more Reverse Complement Of Dna Strand Using Python
Parsing A Genbank File Format With Biopython's Seqio

Parsing A Genbank File Format With Biopython's Seqio

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I'm trying to parse a protein genbank file format, Here's an example file (example.protein.… Read more Parsing A Genbank File Format With Biopython's Seqio
Using Search Terms With Biopython To Return Accession Numbers

Using Search Terms With Biopython To Return Accession Numbers

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I am trying to use Biopython (Entrez) with search terms that will return the accession number (and … Read more Using Search Terms With Biopython To Return Accession Numbers